Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs74627636 | chr2:70461775 | C/A | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs74639992 | chr11:125707204 | A/T | 5.8E-5 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs74675327 | chr1:200539709 | C/T | 0 | 173 | 15.13 | 16.13 | 1.03 | KM Plot |
| PAAD | rs74683900 | chr1:227226260 | C/T | 4.08E-5 | 176 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs74688907 | chr1:227568238 | T/C | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs74710463 | chr2:70412930 | T/C | 0 | 175 | 15.37 | 18.43 | 1.03 | KM Plot |
| PAAD | rs74782247 | chr1:227275946 | T/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs7481569 | chr11:125565374 | T/C | 4.48E-5 | 177 | 16.05 | 11.6 | 4.1 | KM Plot |
| PAAD | rs74827820 | chr11:34770370 | A/T | 8.7E-6 | 177 | 15.57 | 12.55 | 3.67 | KM Plot |
| PAAD | rs74840653 | chr1:227281814 | A/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs74856077 | chr2:70527649 | G/C | 0 | 175 | 15.4 | 17.4 | 1.03 | KM Plot |
| PAAD | rs74877892 | chr1:227355545 | T/C | 3.69E-5 | 177 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs74882064 | chr1:166299179 | G/T | 2.97E-9 | 171 | 15.33 | 15.87 | 2.2 | KM Plot |
| PAAD | rs74896174 | chr1:227512973 | G/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs74918018 | chr11:68514017 | G/A | 8.79E-10 | 178 | 15.57 | 14.2 | 2.2 | KM Plot |